PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_9B9365AF7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 290aa    MW: 33307.4 Da    PI: 7.4517
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_9B9365AF7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17220254135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++C + +Tp+WR+gp g+ktLCnaCG++y++ +l
  Traes_5DS_9B9365AF7.1 220 CTHCLSHTTPQWRSGPLGPKTLCNACGVRYKSGRL 254
                            *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-4118171IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-5123157IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.629127156IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543214250IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-16214268IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-14218278No hitNo description
CDDcd002022.17E-13219266No hitNo description
Gene3DG3DSA:3.30.50.102.1E-13219252IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-15220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
KESEDSSTEW LSIYLEDCLT NPASYPVSEE QASVNPNLPH PSSSNPRRKK RSLASVIRDS  60
DEEYFLIVEP PLLLDQKHWL AESELILPKK DKDQELVQKL EQEHEEEYKP YTVQFKQEQA  120
VMRCSVCLSN SNQTPQQWQG GPSGALLCNT CSLRLKAGNG FIKLERCGQQ VDEEQDHGRG  180
QDKRKIKKTT YYGDDEQGKR RTKKTYVNEE VPLEEPVKRC THCLSHTTPQ WRSGPLGPKT  240
LCNACGVRYK SGRLLPEYRP ANSPTFVSFM HSNSHKKVMQ MRKSVENEHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182203KRKIKKTTYYGDDEQGKRRTKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562810.0AC256281.1 Hordeum vulgare clone HV_Mba475-H03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579113.11e-122PREDICTED: GATA transcription factor 2-like
TrEMBLW5G3F40.0W5G3F4_WHEAT; Uncharacterized protein
STRINGBRADI4G01140.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-36GATA transcription factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]